#================================================== #All numbers are READ count #================================================== Total records: 87311207 QC failed: 0 Optical/PCR duplicate: 21958728 Non primary hits 4594315 Unmapped reads: 9214754 mapq < mapq_cut (non-unique): 2144129 mapq >= mapq_cut (unique): 49399281 Read-1: 24703515 Read-2: 24695766 Reads map to '+': 24699682 Reads map to '-': 24699599 Non-splice reads: 33891839 Splice reads: 15507442 Reads mapped in proper pairs: 49387372 Proper-paired reads map to different chrom:0