#================================================== #All numbers are READ count #================================================== Total records: 105847807 QC failed: 0 Optical/PCR duplicate: 38936676 Non primary hits 9889965 Unmapped reads: 2147306 mapq < mapq_cut (non-unique): 2666920 mapq >= mapq_cut (unique): 52206940 Read-1: 26108902 Read-2: 26098038 Reads map to '+': 26103506 Reads map to '-': 26103434 Non-splice reads: 34572952 Splice reads: 17633988 Reads mapped in proper pairs: 52187820 Proper-paired reads map to different chrom:0