#================================================== #All numbers are READ count #================================================== Total records: 118912968 QC failed: 0 Optical/PCR duplicate: 46270004 Non primary hits 7019004 Unmapped reads: 3817363 mapq < mapq_cut (non-unique): 2497702 mapq >= mapq_cut (unique): 59308895 Read-1: 29657820 Read-2: 29651075 Reads map to '+': 29654363 Reads map to '-': 29654532 Non-splice reads: 42053228 Splice reads: 17255667 Reads mapped in proper pairs: 59298610 Proper-paired reads map to different chrom:0