#================================================== #All numbers are READ count #================================================== Total records: 54847486 QC failed: 0 Optical/PCR duplicate: 17191894 Non primary hits 3936006 Unmapped reads: 2150599 mapq < mapq_cut (non-unique): 1412995 mapq >= mapq_cut (unique): 30155992 Read-1: 15080312 Read-2: 15075680 Reads map to '+': 15077871 Reads map to '-': 15078121 Non-splice reads: 21566413 Splice reads: 8589579 Reads mapped in proper pairs: 30149928 Proper-paired reads map to different chrom:0