#================================================== #All numbers are READ count #================================================== Total records: 63215339 QC failed: 0 Optical/PCR duplicate: 22261869 Non primary hits 3605043 Unmapped reads: 5049338 mapq < mapq_cut (non-unique): 1412427 mapq >= mapq_cut (unique): 30886662 Read-1: 15445776 Read-2: 15440886 Reads map to '+': 15443249 Reads map to '-': 15443413 Non-splice reads: 21892595 Splice reads: 8994067 Reads mapped in proper pairs: 30879408 Proper-paired reads map to different chrom:0