#================================================== #All numbers are READ count #================================================== Total records: 82529133 QC failed: 0 Optical/PCR duplicate: 30056139 Non primary hits 4293927 Unmapped reads: 7300127 mapq < mapq_cut (non-unique): 1599135 mapq >= mapq_cut (unique): 39279805 Read-1: 19642561 Read-2: 19637244 Reads map to '+': 19639858 Reads map to '-': 19639947 Non-splice reads: 28626183 Splice reads: 10653622 Reads mapped in proper pairs: 39271782 Proper-paired reads map to different chrom:0