#================================================== #All numbers are READ count #================================================== Total records: 61029905 QC failed: 0 Optical/PCR duplicate: 22625357 Non primary hits 3393939 Unmapped reads: 3282499 mapq < mapq_cut (non-unique): 1297676 mapq >= mapq_cut (unique): 30430434 Read-1: 15216752 Read-2: 15213682 Reads map to '+': 15215170 Reads map to '-': 15215264 Non-splice reads: 22116144 Splice reads: 8314290 Reads mapped in proper pairs: 30425046 Proper-paired reads map to different chrom:0