#================================================== #All numbers are READ count #================================================== Total records: 104378159 QC failed: 0 Optical/PCR duplicate: 37922320 Non primary hits 7170125 Unmapped reads: 2996215 mapq < mapq_cut (non-unique): 2391243 mapq >= mapq_cut (unique): 53898256 Read-1: 26951205 Read-2: 26947051 Reads map to '+': 26949008 Reads map to '-': 26949248 Non-splice reads: 39139145 Splice reads: 14759111 Reads mapped in proper pairs: 53888870 Proper-paired reads map to different chrom:0