#================================================== #All numbers are READ count #================================================== Total records: 103432797 QC failed: 0 Optical/PCR duplicate: 46756737 Non primary hits 5667193 Unmapped reads: 5059886 mapq < mapq_cut (non-unique): 1885805 mapq >= mapq_cut (unique): 44063176 Read-1: 22034571 Read-2: 22028605 Reads map to '+': 22031533 Reads map to '-': 22031643 Non-splice reads: 32975320 Splice reads: 11087856 Reads mapped in proper pairs: 44053714 Proper-paired reads map to different chrom:0