#================================================== #All numbers are READ count #================================================== Total records: 92209776 QC failed: 0 Optical/PCR duplicate: 34025117 Non primary hits 5411228 Unmapped reads: 3569389 mapq < mapq_cut (non-unique): 2028677 mapq >= mapq_cut (unique): 47175365 Read-1: 23590147 Read-2: 23585218 Reads map to '+': 23587550 Reads map to '-': 23587815 Non-splice reads: 33325760 Splice reads: 13849605 Reads mapped in proper pairs: 47167474 Proper-paired reads map to different chrom:0