#================================================== #All numbers are READ count #================================================== Total records: 74450908 QC failed: 0 Optical/PCR duplicate: 26339422 Non primary hits 4303388 Unmapped reads: 1784577 mapq < mapq_cut (non-unique): 1661876 mapq >= mapq_cut (unique): 40361645 Read-1: 20183029 Read-2: 20178616 Reads map to '+': 20180744 Reads map to '-': 20180901 Non-splice reads: 28591189 Splice reads: 11770456 Reads mapped in proper pairs: 40354536 Proper-paired reads map to different chrom:0