#================================================== #All numbers are READ count #================================================== Total records: 102797989 QC failed: 0 Optical/PCR duplicate: 60195925 Non primary hits 7312983 Unmapped reads: 10989214 mapq < mapq_cut (non-unique): 1214282 mapq >= mapq_cut (unique): 23085585 Read-1: 11545639 Read-2: 11539946 Reads map to '+': 11542789 Reads map to '-': 11542796 Non-splice reads: 17246789 Splice reads: 5838796 Reads mapped in proper pairs: 23076524 Proper-paired reads map to different chrom:0