#================================================== #All numbers are READ count #================================================== Total records: 84226367 QC failed: 0 Optical/PCR duplicate: 29398078 Non primary hits 4775333 Unmapped reads: 3390404 mapq < mapq_cut (non-unique): 1839684 mapq >= mapq_cut (unique): 44822868 Read-1: 22413673 Read-2: 22409195 Reads map to '+': 22411408 Reads map to '-': 22411460 Non-splice reads: 31357976 Splice reads: 13464892 Reads mapped in proper pairs: 44815986 Proper-paired reads map to different chrom:0