#================================================== #All numbers are READ count #================================================== Total records: 67521261 QC failed: 0 Optical/PCR duplicate: 23852693 Non primary hits 3650327 Unmapped reads: 1318855 mapq < mapq_cut (non-unique): 1468073 mapq >= mapq_cut (unique): 37231313 Read-1: 18617730 Read-2: 18613583 Reads map to '+': 18615588 Reads map to '-': 18615725 Non-splice reads: 26474061 Splice reads: 10757252 Reads mapped in proper pairs: 37224712 Proper-paired reads map to different chrom:0