#================================================== #All numbers are READ count #================================================== Total records: 152482054 QC failed: 0 Optical/PCR duplicate: 74971257 Non primary hits 10790428 Unmapped reads: 3964535 mapq < mapq_cut (non-unique): 2757306 mapq >= mapq_cut (unique): 59998528 Read-1: 30001857 Read-2: 29996671 Reads map to '+': 29999271 Reads map to '-': 29999257 Non-splice reads: 40786850 Splice reads: 19211678 Reads mapped in proper pairs: 59990700 Proper-paired reads map to different chrom:0