#================================================== #All numbers are READ count #================================================== Total records: 98088760 QC failed: 0 Optical/PCR duplicate: 52133599 Non primary hits 7888242 Unmapped reads: 2309888 mapq < mapq_cut (non-unique): 1690837 mapq >= mapq_cut (unique): 34066194 Read-1: 17034290 Read-2: 17031904 Reads map to '+': 17033045 Reads map to '-': 17033149 Non-splice reads: 25242336 Splice reads: 8823858 Reads mapped in proper pairs: 34059500 Proper-paired reads map to different chrom:0