#================================================== #All numbers are READ count #================================================== Total records: 130031124 QC failed: 0 Optical/PCR duplicate: 51254999 Non primary hits 7475384 Unmapped reads: 4212999 mapq < mapq_cut (non-unique): 2693368 mapq >= mapq_cut (unique): 64394374 Read-1: 32201495 Read-2: 32192879 Reads map to '+': 32197125 Reads map to '-': 32197249 Non-splice reads: 45448501 Splice reads: 18945873 Reads mapped in proper pairs: 64381080 Proper-paired reads map to different chrom:0