#================================================== #All numbers are READ count #================================================== Total records: 101310265 QC failed: 0 Optical/PCR duplicate: 34616752 Non primary hits 5144315 Unmapped reads: 8634736 mapq < mapq_cut (non-unique): 2093828 mapq >= mapq_cut (unique): 50820634 Read-1: 25414119 Read-2: 25406515 Reads map to '+': 25410209 Reads map to '-': 25410425 Non-splice reads: 36053933 Splice reads: 14766701 Reads mapped in proper pairs: 50808614 Proper-paired reads map to different chrom:0