#================================================== #All numbers are READ count #================================================== Total records: 109414611 QC failed: 0 Optical/PCR duplicate: 44794071 Non primary hits 6486787 Unmapped reads: 2223511 mapq < mapq_cut (non-unique): 2515101 mapq >= mapq_cut (unique): 53395141 Read-1: 26701866 Read-2: 26693275 Reads map to '+': 26697575 Reads map to '-': 26697566 Non-splice reads: 34014949 Splice reads: 19380192 Reads mapped in proper pairs: 53376846 Proper-paired reads map to different chrom:0