#================================================== #All numbers are READ count #================================================== Total records: 86806031 QC failed: 0 Optical/PCR duplicate: 37524004 Non primary hits 4774063 Unmapped reads: 5729070 mapq < mapq_cut (non-unique): 1699564 mapq >= mapq_cut (unique): 37079330 Read-1: 18542137 Read-2: 18537193 Reads map to '+': 18539646 Reads map to '-': 18539684 Non-splice reads: 25660445 Splice reads: 11418885 Reads mapped in proper pairs: 37071522 Proper-paired reads map to different chrom:0