#================================================== #All numbers are READ count #================================================== Total records: 75382969 QC failed: 0 Optical/PCR duplicate: 19588608 Non primary hits 4258731 Unmapped reads: 5777527 mapq < mapq_cut (non-unique): 1878882 mapq >= mapq_cut (unique): 43879221 Read-1: 21942941 Read-2: 21936280 Reads map to '+': 21939549 Reads map to '-': 21939672 Non-splice reads: 30875455 Splice reads: 13003766 Reads mapped in proper pairs: 43868974 Proper-paired reads map to different chrom:0