#================================================== #All numbers are READ count #================================================== Total records: 228268435 QC failed: 0 Optical/PCR duplicate: 107951478 Non primary hits 14190709 Unmapped reads: 6840020 mapq < mapq_cut (non-unique): 4264141 mapq >= mapq_cut (unique): 95022087 Read-1: 47516978 Read-2: 47505109 Reads map to '+': 47510977 Reads map to '-': 47511110 Non-splice reads: 63228469 Splice reads: 31793618 Reads mapped in proper pairs: 95001000 Proper-paired reads map to different chrom:0