#================================================== #All numbers are READ count #================================================== Total records: 102935065 QC failed: 0 Optical/PCR duplicate: 44134483 Non primary hits 9124191 Unmapped reads: 2756487 mapq < mapq_cut (non-unique): 2456818 mapq >= mapq_cut (unique): 44463086 Read-1: 22235756 Read-2: 22227330 Reads map to '+': 22231538 Reads map to '-': 22231548 Non-splice reads: 28930522 Splice reads: 15532564 Reads mapped in proper pairs: 44447160 Proper-paired reads map to different chrom:0