#================================================== #All numbers are READ count #================================================== Total records: 97087835 QC failed: 0 Optical/PCR duplicate: 42641405 Non primary hits 7179949 Unmapped reads: 2527784 mapq < mapq_cut (non-unique): 2254846 mapq >= mapq_cut (unique): 42483851 Read-1: 21245752 Read-2: 21238099 Reads map to '+': 21241846 Reads map to '-': 21242005 Non-splice reads: 26820049 Splice reads: 15663802 Reads mapped in proper pairs: 42469390 Proper-paired reads map to different chrom:0