#================================================== #All numbers are READ count #================================================== Total records: 75090719 QC failed: 0 Optical/PCR duplicate: 27418425 Non primary hits 4808885 Unmapped reads: 2073297 mapq < mapq_cut (non-unique): 1755186 mapq >= mapq_cut (unique): 39034926 Read-1: 19519173 Read-2: 19515753 Reads map to '+': 19517454 Reads map to '-': 19517472 Non-splice reads: 25885828 Splice reads: 13149098 Reads mapped in proper pairs: 39029676 Proper-paired reads map to different chrom:0