#================================================== #All numbers are READ count #================================================== Total records: 99067594 QC failed: 0 Optical/PCR duplicate: 35578048 Non primary hits 5072496 Unmapped reads: 8308007 mapq < mapq_cut (non-unique): 1994695 mapq >= mapq_cut (unique): 48114348 Read-1: 24060230 Read-2: 24054118 Reads map to '+': 24057115 Reads map to '-': 24057233 Non-splice reads: 33709761 Splice reads: 14404587 Reads mapped in proper pairs: 48105260 Proper-paired reads map to different chrom:0