#================================================== #All numbers are READ count #================================================== Total records: 75874120 QC failed: 0 Optical/PCR duplicate: 26273928 Non primary hits 4090272 Unmapped reads: 5995000 mapq < mapq_cut (non-unique): 1609301 mapq >= mapq_cut (unique): 37905619 Read-1: 18955229 Read-2: 18950390 Reads map to '+': 18952827 Reads map to '-': 18952792 Non-splice reads: 26574604 Splice reads: 11331015 Reads mapped in proper pairs: 37898064 Proper-paired reads map to different chrom:0