#================================================== #All numbers are READ count #================================================== Total records: 93669255 QC failed: 0 Optical/PCR duplicate: 48762503 Non primary hits 5809229 Unmapped reads: 3006678 mapq < mapq_cut (non-unique): 1733600 mapq >= mapq_cut (unique): 34357245 Read-1: 17180750 Read-2: 17176495 Reads map to '+': 17178584 Reads map to '-': 17178661 Non-splice reads: 22852638 Splice reads: 11504607 Reads mapped in proper pairs: 34344892 Proper-paired reads map to different chrom:0