#================================================== #All numbers are READ count #================================================== Total records: 126293062 QC failed: 0 Optical/PCR duplicate: 54491820 Non primary hits 7436822 Unmapped reads: 4107292 mapq < mapq_cut (non-unique): 2444055 mapq >= mapq_cut (unique): 57813073 Read-1: 28910551 Read-2: 28902522 Reads map to '+': 28906506 Reads map to '-': 28906567 Non-splice reads: 41726250 Splice reads: 16086823 Reads mapped in proper pairs: 57801250 Proper-paired reads map to different chrom:0