#================================================== #All numbers are READ count #================================================== Total records: 68850471 QC failed: 0 Optical/PCR duplicate: 22528407 Non primary hits 4844355 Unmapped reads: 1353825 mapq < mapq_cut (non-unique): 1746315 mapq >= mapq_cut (unique): 38377569 Read-1: 19191375 Read-2: 19186194 Reads map to '+': 19188664 Reads map to '-': 19188905 Non-splice reads: 27214286 Splice reads: 11163283 Reads mapped in proper pairs: 38369954 Proper-paired reads map to different chrom:0