#================================================== #All numbers are READ count #================================================== Total records: 86565609 QC failed: 0 Optical/PCR duplicate: 24547234 Non primary hits 5351383 Unmapped reads: 5564533 mapq < mapq_cut (non-unique): 2099987 mapq >= mapq_cut (unique): 49002472 Read-1: 24505311 Read-2: 24497161 Reads map to '+': 24501243 Reads map to '-': 24501229 Non-splice reads: 34579392 Splice reads: 14423080 Reads mapped in proper pairs: 48990528 Proper-paired reads map to different chrom:0