#================================================== #All numbers are READ count #================================================== Total records: 183491427 QC failed: 0 Optical/PCR duplicate: 90449908 Non primary hits 8568557 Unmapped reads: 21205742 mapq < mapq_cut (non-unique): 2577634 mapq >= mapq_cut (unique): 60689586 Read-1: 30358706 Read-2: 30330880 Reads map to '+': 30344646 Reads map to '-': 30344940 Non-splice reads: 40183776 Splice reads: 20505810 Reads mapped in proper pairs: 60656904 Proper-paired reads map to different chrom:0