#================================================== #All numbers are READ count #================================================== Total records: 116962690 QC failed: 0 Optical/PCR duplicate: 48321671 Non primary hits 11112534 Unmapped reads: 2441810 mapq < mapq_cut (non-unique): 2744341 mapq >= mapq_cut (unique): 52342334 Read-1: 26175932 Read-2: 26166402 Reads map to '+': 26171236 Reads map to '-': 26171098 Non-splice reads: 34965163 Splice reads: 17377171 Reads mapped in proper pairs: 52323744 Proper-paired reads map to different chrom:0