#================================================== #All numbers are READ count #================================================== Total records: 99907959 QC failed: 0 Optical/PCR duplicate: 37938434 Non primary hits 5110789 Unmapped reads: 7222245 mapq < mapq_cut (non-unique): 1940714 mapq >= mapq_cut (unique): 47695777 Read-1: 23852074 Read-2: 23843703 Reads map to '+': 23847770 Reads map to '-': 23848007 Non-splice reads: 33594970 Splice reads: 14100807 Reads mapped in proper pairs: 47679312 Proper-paired reads map to different chrom:0