#================================================== #All numbers are READ count #================================================== Total records: 103797370 QC failed: 0 Optical/PCR duplicate: 36105485 Non primary hits 11612748 Unmapped reads: 2173854 mapq < mapq_cut (non-unique): 2693639 mapq >= mapq_cut (unique): 51211644 Read-1: 25609436 Read-2: 25602208 Reads map to '+': 25605731 Reads map to '-': 25605913 Non-splice reads: 33709110 Splice reads: 17502534 Reads mapped in proper pairs: 51191414 Proper-paired reads map to different chrom:0