#================================================== #All numbers are READ count #================================================== Total records: 107609485 QC failed: 0 Optical/PCR duplicate: 49164481 Non primary hits 8136107 Unmapped reads: 4500566 mapq < mapq_cut (non-unique): 2187347 mapq >= mapq_cut (unique): 43620984 Read-1: 21813195 Read-2: 21807789 Reads map to '+': 21810446 Reads map to '-': 21810538 Non-splice reads: 31429184 Splice reads: 12191800 Reads mapped in proper pairs: 43611046 Proper-paired reads map to different chrom:0