#================================================== #All numbers are READ count #================================================== Total records: 79302554 QC failed: 0 Optical/PCR duplicate: 25763996 Non primary hits 4390582 Unmapped reads: 6625723 mapq < mapq_cut (non-unique): 1754485 mapq >= mapq_cut (unique): 40767768 Read-1: 20387537 Read-2: 20380231 Reads map to '+': 20383765 Reads map to '-': 20384003 Non-splice reads: 28580418 Splice reads: 12187350 Reads mapped in proper pairs: 40757378 Proper-paired reads map to different chrom:0