#================================================== #All numbers are READ count #================================================== Total records: 128273837 QC failed: 0 Optical/PCR duplicate: 51509387 Non primary hits 7014793 Unmapped reads: 8841247 mapq < mapq_cut (non-unique): 2401428 mapq >= mapq_cut (unique): 58506982 Read-1: 29259215 Read-2: 29247767 Reads map to '+': 29253361 Reads map to '-': 29253621 Non-splice reads: 41707203 Splice reads: 16799779 Reads mapped in proper pairs: 58491144 Proper-paired reads map to different chrom:0