#================================================== #All numbers are READ count #================================================== Total records: 82612770 QC failed: 0 Optical/PCR duplicate: 50216760 Non primary hits 5000394 Unmapped reads: 1786247 mapq < mapq_cut (non-unique): 1058911 mapq >= mapq_cut (unique): 24550458 Read-1: 12276081 Read-2: 12274377 Reads map to '+': 12275212 Reads map to '-': 12275246 Non-splice reads: 17121160 Splice reads: 7429298 Reads mapped in proper pairs: 24546784 Proper-paired reads map to different chrom:0