#================================================== #All numbers are READ count #================================================== Total records: 109260613 QC failed: 0 Optical/PCR duplicate: 40480884 Non primary hits 6821513 Unmapped reads: 18192759 mapq < mapq_cut (non-unique): 2059590 mapq >= mapq_cut (unique): 41705867 Read-1: 20865668 Read-2: 20840199 Reads map to '+': 20853019 Reads map to '-': 20852848 Non-splice reads: 29907688 Splice reads: 11798179 Reads mapped in proper pairs: 41666344 Proper-paired reads map to different chrom:0