#================================================== #All numbers are READ count #================================================== Total records: 97882721 QC failed: 0 Optical/PCR duplicate: 42138227 Non primary hits 7222413 Unmapped reads: 2139304 mapq < mapq_cut (non-unique): 2074696 mapq >= mapq_cut (unique): 44308081 Read-1: 22156208 Read-2: 22151873 Reads map to '+': 22153952 Reads map to '-': 22154129 Non-splice reads: 31267534 Splice reads: 13040547 Reads mapped in proper pairs: 44300028 Proper-paired reads map to different chrom:0