#================================================== #All numbers are READ count #================================================== Total records: 87436918 QC failed: 0 Optical/PCR duplicate: 50810537 Non primary hits 5679056 Unmapped reads: 2190528 mapq < mapq_cut (non-unique): 1464362 mapq >= mapq_cut (unique): 27292435 Read-1: 13648410 Read-2: 13644025 Reads map to '+': 13646189 Reads map to '-': 13646246 Non-splice reads: 18216729 Splice reads: 9075706 Reads mapped in proper pairs: 27284968 Proper-paired reads map to different chrom:0