#================================================== #All numbers are READ count #================================================== Total records: 160328787 QC failed: 0 Optical/PCR duplicate: 78484526 Non primary hits 11090003 Unmapped reads: 5082159 mapq < mapq_cut (non-unique): 2871420 mapq >= mapq_cut (unique): 62800679 Read-1: 31402352 Read-2: 31398327 Reads map to '+': 31400239 Reads map to '-': 31400440 Non-splice reads: 43683473 Splice reads: 19117206 Reads mapped in proper pairs: 62793502 Proper-paired reads map to different chrom:0