#================================================== #All numbers are READ count #================================================== Total records: 82189349 QC failed: 0 Optical/PCR duplicate: 29883473 Non primary hits 5540949 Unmapped reads: 2332131 mapq < mapq_cut (non-unique): 1870537 mapq >= mapq_cut (unique): 42562259 Read-1: 21283715 Read-2: 21278544 Reads map to '+': 21281042 Reads map to '-': 21281217 Non-splice reads: 30697898 Splice reads: 11864361 Reads mapped in proper pairs: 42554482 Proper-paired reads map to different chrom:0