#================================================== #All numbers are READ count #================================================== Total records: 96015817 QC failed: 0 Optical/PCR duplicate: 36670112 Non primary hits 7212939 Unmapped reads: 3021345 mapq < mapq_cut (non-unique): 2212935 mapq >= mapq_cut (unique): 46898486 Read-1: 23452058 Read-2: 23446428 Reads map to '+': 23449250 Reads map to '-': 23449236 Non-splice reads: 33304937 Splice reads: 13593549 Reads mapped in proper pairs: 46888680 Proper-paired reads map to different chrom:0