#================================================== #All numbers are READ count #================================================== Total records: 74016628 QC failed: 0 Optical/PCR duplicate: 28245141 Non primary hits 4411598 Unmapped reads: 4158452 mapq < mapq_cut (non-unique): 1580222 mapq >= mapq_cut (unique): 35621215 Read-1: 17813403 Read-2: 17807812 Reads map to '+': 17810615 Reads map to '-': 17810600 Non-splice reads: 26511791 Splice reads: 9109424 Reads mapped in proper pairs: 35612720 Proper-paired reads map to different chrom:0