#================================================== #All numbers are READ count #================================================== Total records: 109165156 QC failed: 0 Optical/PCR duplicate: 43141206 Non primary hits 7082962 Unmapped reads: 3301757 mapq < mapq_cut (non-unique): 2340630 mapq >= mapq_cut (unique): 53298601 Read-1: 26652797 Read-2: 26645804 Reads map to '+': 26649319 Reads map to '-': 26649282 Non-splice reads: 37496010 Splice reads: 15802591 Reads mapped in proper pairs: 53287286 Proper-paired reads map to different chrom:0