#================================================== #All numbers are READ count #================================================== Total records: 78233482 QC failed: 0 Optical/PCR duplicate: 31757884 Non primary hits 3882018 Unmapped reads: 5652016 mapq < mapq_cut (non-unique): 1436375 mapq >= mapq_cut (unique): 35505189 Read-1: 17755332 Read-2: 17749857 Reads map to '+': 17752560 Reads map to '-': 17752629 Non-splice reads: 25371783 Splice reads: 10133406 Reads mapped in proper pairs: 35497812 Proper-paired reads map to different chrom:0