#================================================== #All numbers are READ count #================================================== Total records: 80758048 QC failed: 0 Optical/PCR duplicate: 30040121 Non primary hits 5454916 Unmapped reads: 3428711 mapq < mapq_cut (non-unique): 1851827 mapq >= mapq_cut (unique): 39982473 Read-1: 19993359 Read-2: 19989114 Reads map to '+': 19991185 Reads map to '-': 19991288 Non-splice reads: 27934747 Splice reads: 12047726 Reads mapped in proper pairs: 39975708 Proper-paired reads map to different chrom:0