#================================================== #All numbers are READ count #================================================== Total records: 94726130 QC failed: 0 Optical/PCR duplicate: 49661525 Non primary hits 13333300 Unmapped reads: 4378773 mapq < mapq_cut (non-unique): 1620515 mapq >= mapq_cut (unique): 25732017 Read-1: 12866619 Read-2: 12865398 Reads map to '+': 12865860 Reads map to '-': 12866157 Non-splice reads: 19680156 Splice reads: 6051861 Reads mapped in proper pairs: 25714620 Proper-paired reads map to different chrom:0